Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| CESC | rs12136268 | chr1:40339467 | G/A | 3.5E-5 | 223 | 14.27 | 9.8 | 8.4 | KM Plot |
| CESC | rs12142287 | chr1:15516379 | G/A | 9.87E-5 | 220 | 14.27 | 14.08 | 5.83 | KM Plot |
| CESC | rs12155446 | chr7:130622295 | A/G | 5.91E-5 | 224 | 4.97 | 14.1 | 14.07 | KM Plot |
| CESC | rs12297460 | chr12:58695627 | G/A | 0.000101 | 214 | 13 | 17.27 | 3.2 | KM Plot |
| CESC | rs12461843 | chr19:50497849 | G/A | 3.44E-5 | 219 | 13.95 | 14.6 | 8.4 | KM Plot |
| CESC | rs12484550 | chr22:21941915 | C/T | 5.52E-5 | 224 | 15.7 | 12.83 | 7.57 | KM Plot |
| CESC | rs12504347 | chr4:56700160 | G/T | 3.24E-7 | 224 | 14.07 | 18.27 | 5.03 | KM Plot |
| CESC | rs137882240 | chr1:40346661 | G/A | 3.5E-5 | 223 | 14.27 | 9.8 | 8.4 | KM Plot |
| CESC | rs140450378 | chr17:28985824 | A/G | 0 | 222 | 14.7 | 9.83 | 1.23 | KM Plot |
| CESC | rs140995305 | chr22:43003687 | G/A | 1.49E-5 | 217 | 15 | 14.27 | 5 | KM Plot |
| CESC | rs142111226 | chr16:1867531 | CCCA/C | 4.58E-5 | 224 | 13.8 | 15.17 | 6.02 | KM Plot |
| CESC | rs142215506 | chr1:40372928 | AT/A | 1.36E-6 | 220 | 13.8 | 20.52 | 8.4 | KM Plot |
| CESC | rs145289306 | chr12:58691912 | GCAAA/G | 9.87E-5 | 215 | 13 | 17.77 | 3.2 | KM Plot |
| CESC | rs145453986 | chr16:1864176 | TAAAAG/T | 4.8E-5 | 223 | 13.8 | 15.03 | 6.02 | KM Plot |
| CESC | rs1472172 | chr4:145602124 | G/T | 6.12E-5 | 224 | 14.7 | 13.88 | 5.53 | KM Plot |